Additional read information, usually represented as optional tags. More...

Public Member Functions
	accessory ()
	Constructor, init defaults.

void	reset ()

bool	empty () const

void	write (std::ostream &str, const char *const sep) const

Public Attributes
int	badqual_flags
	Bad quality filtering flags (BAD).

int	edit_distance_hint
	Read was previously mappable at this edit distance (DST).

uint16_t	clip_left
	Left clip position (CLL).

uint16_t	clip_right
	Right clip position (CLR).

std::string	barcode
	Barcode sequence (BAR).

std::string	readgroup
	Read group (RGR).

int	num_reads
	Number of reads for the template. More...

PeOrientation	ori

Detailed Description

Additional read information, usually represented as optional tags.

Member Data Documentation

int shore::read::accessory::num_reads

Number of reads for the template.

0=default (only allowed for index in 0..2): index=0 -> 1 index>0 -> index

The documentation for this struct was generated from the following file: