shore::refseq_coor Struct Reference

Reference sequence coordinates. More...

Public Types
typedef int	chr_t
typedef long	pos_t
typedef long	diff_t

Public Member Functions
	refseq_coor ()
	Constructor: initialize to (1,1)
	refseq_coor (chr_t c, pos_t p)
	Construct and initialize.
refseq_coor &	operator++ ()
refseq_coor &	operator-- ()
refseq_coor	operator++ (int)
refseq_coor	operator-- (int)
refseq_coor &	operator+= (const diff_t d)
refseq_coor &	operator-= (const diff_t d)

Static Public Member Functions
static refseq_coor	max ()
	Get the largest possible values for chromosome and position.
static refseq_coor	min ()
	Get the smallest possible values for chromosome and position (invalid negative coordinates!).

Public Attributes
chr_t	chromosome
	Reference sequence / chromosome ID.
pos_t	position
	Position on the chromosome, 1-based.

Detailed Description

Reference sequence coordinates.

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The documentation for this struct was generated from the following file:

• shore/datatype/coor.hpp