shore::dp_alignment< RefIter, QryIter, Scoring > Struct Template Reference

Representation of a dynamic programming alignment. More...

Public Attributes
AlignmentMode	left_ends
	Mode by which the left ends were aligned.
AlignmentMode	right_ends
	Mode by which the right ends should be aligned.
const Scoring *	scoring
	The scoring scheme used.
dp_sequence< RefIter >	ref
	Reference.
dp_sequence< QryIter >	qry
	Query.
int	ref_id
	Reference sequence ID (0: NA).
int	ref_hits
	Total number of reference sequences with equally good score (0: NA).
dp_alignment_matrix	alignment_matrix
	The dynamic programming alignment matrix.

Detailed Description

template<typename RefIter, typename QryIter = RefIter, typename Scoring = typename dp_traits<typename std::iterator_traits<RefIter>::value_type, typename std::iterator_traits<QryIter>::value_type>::scoring_type>
struct shore::dp_alignment< RefIter, QryIter, Scoring >

Representation of a dynamic programming alignment.

---

The documentation for this struct was generated from the following file:

• shore/algo/align.hpp