File format independent short read file reader. More...

Public Types
enum	Sorting { SORTING_ID, SORTING_SEQ, SORTING_NONE }

typedef shore::read	current_type

Public Member Functions
	read_reader (const std::string &fn, const Sorting srt=SORTING_ID, const config &c=config())

	read_reader (const std::vector< std::string > &fn, const Sorting srt=SORTING_ID, const config &c=config())

bool	has_data () const

const shore::read &	current () const

void	next ()

int	current_streamid () const

Static Public Member Functions
static void	readid2rltxy (const std::string &id, rltxy *const ret)

static std::string	rltxy2readid (const std::string &run, int lane, int tile, int x, int y)

Detailed Description

File format independent short read file reader.

The documentation for this class was generated from the following file:

Public Types