Build an alignment string base by base. More...

Public Member Functions
void	to_string (std::string &buf, const bool reverse)
	Append the string representation of the alignment to a buffer.

void	add_softclip (const shore::nuc::base b)
	Add a soft clipped base.

void	add_qry (const shore::nuc::base b)
	Add an inserted query base.

void	add_ref (const shore::nuc::base b)
	Add a deleted reference base.

void	add_paired (const shore::nuc::base r, const shore::nuc::base q)
	Add a pair of bases.

size_t	size () const
	Get the size.

bool	empty () const
	Check if empty.

void	resize (const size_t size)
	Resize.

void	clear ()
	Clear.

Detailed Description

Build an alignment string base by base.

The documentation for this class was generated from the following file:

Public Member Functions