Reader for genomic segments in various file formats. More...

Public Member Functions
	segment_reader (const std::string &fn)

	segment_reader (const std::string &fn, const std::string &id, const std::string &chr, const std::string &pos, const std::string &strand, const std::string &size, const std::string &end=std::string())

	segment_reader (std::istream *const in, const bool is_gff=false)

	segment_reader (std::istream *const in, const std::string &id, const std::string &chr, const std::string &pos, const std::string &strand, const std::string &size, const std::string &end=std::string())

const shore::segment &	current () const

bool	has_data ()

void	next ()

const std::string &	current_line () const

const std::string &	get_header () const

bool	is_gff () const

bool	with_id ()

bool	with_strand ()

Detailed Description

Reader for genomic segments in various file formats.

The documentation for this class was generated from the following file:

Public Types