|
| chisquare (shore) | filter (shore) | maplist_writer (shore) | relabs (shore) |
| cmp_tokens (shore) | flatread_tags_parser (shore) | mapping_pair_finder_pipe (shore) | rle_queue (shore) |
| aa (shore) | color2seq (shore) | flatread_writer (shore) | mapping_pair_joiner_pipe (shore) | row_reader (shore) |
| alignment::accessory (shore) | sff_read::commonhead (shore) | flatten_alignment_pipe (shore) | md5_sum (shore) |
|
| read::accessory (shore) | sam_base::config (shore) | frag_vector (shore) | merge (shore) |
| alignment (shore) | alignment_reader::config (shore) |
| mmapping (shore) | sam_base (shore) |
| alignment_3px (shore) | intpack::const_iterator (shore) | mmapping_ifstream (shore) | sam_reader (shore) |
| alignment_builder (shore) | intpack::const_reference (shore) | genomic_coor (shore) | mmapping_source (shore) | sam_writer (shore) |
| alignment_condenser_pipe (shore) | conv_base2char (shore) | genomic_range (shore) | monolithic (shore) | segment_reader (shore) |
| alignment_filter_pipe (shore) | conv_base2char_compl (shore) | genomic_region (shore) | mpi (shore) | segment_writer (shore) |
| alignment_helper (shore) | conv_base2packed (shore) | geometric (shore) | mtc (shore) | seqid_translator (shore) |
| alignment_queue (shore) | conv_base2packed_compl (shore) | gff_reader (shore) |
| sequence_record (shore) |
| alignment_reader (shore) | conv_base_compl (shore) | gff_writer (shore) | serial (shore) |
| alignment_statistic (shore) | conv_char2base (shore) | glht (shore) | nuc (shore) | serialization_core_access (shore) |
| alignment_token (shore) | conv_char2base_compl (shore) | glm (shore) |
| sff_flatten_pipe (shore) |
| alignment_tokenizer (shore) | conv_char2packed (shore) | gzx_istream (shore) | sff_read (shore) |
| alignment_trimmer_pipe (shore) | conv_char2packed_compl (shore) | gzx_ostream (shore) | opipe (shore) | sig_spec (shore) |
| aln_writer (shore) | conv_char_compl (shore) | gzxbase (shore) | opt_base (shore) | sig_spec< void > (shore) |
| annotation_entry (shore) | conv_int2base (shore) | gzxdeflater (shore) | opt_base1 (shore) | signal (shore) |
| av_option (shore) | conv_int2base_compl (shore) | gzxdeflater_sink (shore) | opt_base2 (shore) | sink (shore) |
| av_option< bool > (shore) | conv_int2char (shore) | gzxindex (shore) | ostreams (shore) | size_iterator (shore) |
| av_option< std::pair< T, U > > (shore) | conv_int2char_compl (shore) | gzxinflater (shore) |
| slot (shore) |
| av_option< std::set< T > > (shore) | conv_int2packed (shore) | gzxinflater_source (shore) | sorting_check (shore) |
| av_option< std::vector< std::vector< T > > > (shore) | conv_int2packed_compl (shore) |
| packed2base_compl_iterator (shore) | source (shore) |
| av_option< std::vector< T > > (shore) | conv_packed2base (shore) | packed2base_iterator (shore) | source_traits (shore) |
| av_option< unary > (shore) | conv_packed2base_compl (shore) | twodex::header (shore) | packed2char_compl_iterator (shore) | splitter (shore) |
| av_parser (shore) | conv_packed2char (shore) | hits_correction_single_pipe (shore) | packed2char_iterator (shore) | stream_slicer (shore) |
|
| conv_packed2char_compl (shore) |
| packed_compl_iterator (shore) | streams_base (shore) |
| conv_packed_compl (shore) | packeddna_iterator (shore) | suffix_index (shore) |
| bam_reader (shore) | conversion (shore) | iless (shore) | parallel (shore) | sync (shore) |
| base2char_compl_iterator (shore) | conversion_pipe (shore) | suffix_index::incremental_hash (shore) | parallel_log (shore) |
|
| base2char_iterator (shore) | conversion_proxy (shore) | incremental_mean_var (shore) | parallelizer (shore) |
| base2packed_compl_iterator (shore) | coverage (shore) | suffix_index::incremental_query (shore) | pefilter (shore) | thread (shore) |
| base2packed_iterator (shore) |
| suffix_index::incremental_reverse_query (shore) | pipe (shore) | thread_index (shore) |
| base_compl_iterator (shore) | index_comparator (shore) | pipe_facade (shore) | thru (shore) |
| basic_fastq_reader (shore) | d2tree (shore) | index_comparator< DataIter, void > (shore) | pipeline_core_access (shore) | timer (shore) |
| basic_flatread_reader (shore) | delta_reader (shore) | index_generator (shore) | plugin (shore) | tok_occurrence (shore) |
| basic_line_reader (shore) | delta_record (shore) | int2base_compl_iterator (shore) | poisson (shore) | tok_occurrences (shore) |
| basic_maplist_reader (shore) | desync (shore) | int2base_iterator (shore) | poissonifier (shore) | tok_transition (shore) |
| basic_qseq_reader (shore) | xzindex::iterator::detail (shore) | int2char_compl_iterator (shore) | program (shore) | tok_transitions (shore) |
| basic_refdict_reader (shore) | dna_iterator (shore) | int2char_iterator (shore) | psl_reader (shore) | twodex (shore) |
| basic_sff_reader (shore) | dp_aligner_config (shore) | int2packed_compl_iterator (shore) | ptrkeeper (shore) |
|
| bed_writer (shore) | dp_aligner_pipe (shore) | int2packed_iterator (shore) |
|
| bedgraph_writer (shore) | dp_alignment (shore) | intpack (shore) | umask_ts (shore) |
| berry (shore) | dp_alignment_matrix (shore) | ipipe (shore) | qual_writer (shore) | uncaught_handler (shore) |
| besthit_filter (shore) | dp_backtracer_config (shore) | istreams (shore) | qualvar_reader (shore) | av_parser::usage_error (shore) |
| binomial (shore) | dp_backtracer_pipe (shore) | xzindex::iterator (shore) |
|
|
| blockcmp_end (shore) | dp_multialigner_pipe (shore) | gzxindex::iterator (shore) |
| blockcmp_pos (shore) | dp_trace (shore) | intpack::iterator (shore) | read (shore) | valterm_iterator (shore) |
| blockcmp_posend (shore) | dp_traits (shore) | suffix_index::iterator (shore) | read_reader (shore) | vcf_writer (shore) |
| buffer_chain (shore) | dp_traits< shore::nuc::base, shore::nuc::base > (shore) |
| sff_read::readdata (shore) |
|
| xzbase::buffer_t (shore) |
| sff_read::readhead (shore) |
| twodex::build_spec (shore) | line_reader (shore) | refcore (shore) | xz_istream (shore) |
| twodex::bytecount (shore) | eland_reader (shore) | line_sorter (shore) | refcore< 0 > (shore) | xz_ostream (shore) |
|
| sorting_check::error (shore) | line_writer (shore) | refcore< 3 > (shore) | xzbase (shore) |
| exponential (shore) | local_variant (shore) | refcore< 64 > (shore) | xzdeflater (shore) |
| char2base_compl_iterator (shore) | extractor (shore) | ltok_occurrence (shore) | refcore< 8 > (shore) | xzdeflater_sink (shore) |
| char2base_iterator (shore) |
| ltok_transition (shore) | refcore_base (shore) | xzindex (shore) |
| char2packed_compl_iterator (shore) |
| refdict_entry (shore) | xzinflater (shore) |
| char2packed_iterator (shore) | fasta_reader (shore) | intpack::reference (shore) | xzinflater_source (shore) |
| char_compl_iterator (shore) | fasta_writer (shore) | manipd (shore) | refseq_coor (shore) | |
| chardna_iterator (shore) | fastq_writer (shore) | maplist_reader (shore) | refseq_range (shore) | |
| chartable (shore) | feed (shore) | maplist_tags_parser (shore) | refseq_region (shore) | |
| | | | |
1.8.4 
