Fastq file reader (basic interface). More...

Inheritance diagram for shore::basic_fastq_reader:

Public Member Functions
	basic_fastq_reader (const std::string &fn)

	basic_fastq_reader (std::istream *const is)

void	set_quality_type (const FastqQualType t)

bool	next (shore::read &r)

std::string	get_name () const

Additional Inherited Members
Protected Member Functions inherited from shore::flatread_tags_parser
void	parse_tags (std::string &s)

void	tagfun_invalid ()

void	tagfun_BAx ()

void	tagfun_DST ()

void	tagfun_CLx ()

void	tagfun_RGR ()

void	tagfun_ORI ()

void	tagfun_NUM ()

Protected Attributes inherited from shore::flatread_tags_parser
shore::read::accessory *	m_readtags

Static Protected Attributes inherited from shore::flatread_tags_parser
static const size_t	MAXTAGS =128*128

Detailed Description

Fastq file reader (basic interface).

The documentation for this class was generated from the following file:

Public Member Functions