Trim alignments that overlap range boundaries. More...

Inheritance diagram for shore::alignment_trimmer_pipe:

Public Member Functions
	alignment_trimmer_pipe (const shore::refseq_range &r)
	Constructor: specify range boundaries.

Public Member Functions inherited from shore::pipe_facade< alignment_trimmer_pipe, shore::alignment, shore::alignment >
	pipe_facade (const pipe_facade &t)
	Copy constructor: need to bind the slots to the correct object.

void	disconnect_inputs ()
	Disconnect all connected upstream pipeline elements.

void	disconnect_outputs ()
	Disconnect all connected downstream pipeline elements.

signal< const shore::alignment & > &	sigdata ()

signal< void > &	sigflush ()

slot< const shore::alignment & > &	slotdata ()

slot< void > &	slotflush ()

slot< void > &	slotfreeze ()

slot< void > &	slotthaw ()

signal< void > &	sigfreeze ()

signal< void > &	sigthaw ()

Additional Inherited Members
Public Types inherited from shore::pipe_facade< alignment_trimmer_pipe, shore::alignment, shore::alignment >
typedef shore::alignment	append_type

typedef shore::alignment	current_type

Protected Types inherited from shore::pipe_facade< alignment_trimmer_pipe, shore::alignment, shore::alignment >
typedef pipe_facade < alignment_trimmer_pipe, shore::alignment, shore::alignment, false >	facade_type

Protected Member Functions inherited from shore::pipe_facade< alignment_trimmer_pipe, shore::alignment, shore::alignment >
void	emit (const shore::alignment &d)
	Called by derived classes to emit data to downstream pipeline elements. More...

Detailed Description

Trim alignments that overlap range boundaries.

The documentation for this class was generated from the following file:

Public Member Functions