shore::dp_traits< RefType, QryType > Struct Template Reference

Dynamic programming type traits. More...

Public Types
typedef void	scoring_type
	Scoring scheme for dynamic programming alignment; must provide the following methods: int get_pair_score(RefType ref,QryType qry); int get_ref_score(RefType ref); int get_qry_score(QryType qry);.
typedef void	alignment_builder_type
	Alignment coder for dynamic programming alignment; must provide the following methods: void to_string(std::string & buf,const bool reverse); void add_softclip(QryType b); void add_qry(QryType b); void add_ref(RefType b); void add_paired(RefType r,QryType q); size_t size() const; void resize(const size_t size); void clear();.

Detailed Description

template<typename RefType, typename QryType>
struct shore::dp_traits< RefType, QryType >

Dynamic programming type traits.

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The documentation for this struct was generated from the following file:

• shore/algo/align.hpp