shore::delta_record Struct Reference

NUCMER or PROMER alignment record. More...

Public Attributes
std::string	files
std::string	delta_type
std::string	ref_seqid
std::string	qry_seqid
size_t	ref_seqsize
size_t	qry_seqsize
size_t	ref_start
	Alignment start on the reference, inclusive.
size_t	ref_end
	Alignment end on the reference, inclusive.
size_t	qry_start
	Alignment start on the query, inclusive; larger than qry_end for reverse alignments!
size_t	qry_end
	Alignment end on the query, inclusive; smaller than qry_start for reverse alignments!
int	err_edit
	Number of edit operations.
int	err_similarity
	Number of 'similarity errors'.
int	nstop
	Number of stop codons for promer alignments.
std::vector< int >	deltas

Detailed Description

NUCMER or PROMER alignment record.

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The documentation for this struct was generated from the following file:

• shore/datatype/datatypes.hpp