Reader for SHORE MapList files (monolithic interface). More...

Inheritance diagram for shore::maplist_reader:

Public Member Functions
	maplist_reader (const std::string &fn, shore::alignment::cmp_type c=shore::alignment::cmp_coor)

const shore::alignment &	current () const

bool	has_data () const

void	next ()

const std::string &	filename () const

const std::string &	current_line () const

void	set_range (const shore::refseq_coor &s, const shore::refseq_coor &e, const long maxrl=0l)

Additional Inherited Members
Protected Member Functions inherited from shore::maplist_tags_parser
void	parse_tags (std::string::const_iterator b, std::string::const_iterator e)

void	tagfun_invalid ()

void	tagfun_RGR ()

void	tagfun_MPQ ()

void	tagfun_ORI ()

void	tagfun_NUM ()

void	tagfun_NXP ()

void	tagfun_OCL ()

Protected Attributes inherited from shore::maplist_tags_parser
shore::alignment::accessory *	m_alignment_tags

Static Protected Attributes inherited from shore::maplist_tags_parser
static const size_t	MAXTAGS =128*128

Detailed Description

Reader for SHORE MapList files (monolithic interface).

The documentation for this class was generated from the following file:

Public Types