FastQ file writer. More...

Public Types
enum	HeaderType { FQH_SHORE, FQH_SHORE_PE, FQH_ILLUMINA }

typedef shore::read	append_type

Public Member Functions
	fastq_writer (const std::string &fn, const HeaderType ht)

void	set_flowcell (const std::string &machine)
	Sets the machine/flowcell string for illumina header format.

void	set_barcode (const std::string &bc)
	Sets the barcode string for illumina header format.

void	set_writetags (const bool b)

void	set_illumina_qualities (const bool q)

void	append (const shore::read &f)

void	flush ()

Detailed Description

FastQ file writer.

The documentation for this class was generated from the following file:

Public Types