Dynamic programming alignment backtracer configuration. More...

Public Attributes
bool	trace_all_alignments
	Perform all possible backtraces.

bool	trace_all_mappings
	Perform all backtraces with differing mapping coordinates.

bool	check_unique_mapping
	Check if traces have unique mapping coordinates.

bool	soft_clip
	Set whether the reported alignment string should include the query offsets as 'soft clip'.

bool	build_alignment
	Set whether to generate an alignment string.

Detailed Description

Dynamic programming alignment backtracer configuration.

The documentation for this struct was generated from the following file:

Public Attributes