Amino acid symbols. More...

Public Types
enum	packed_proteinogenic { PCK_NONE, PCK_ALANINE, PCK_ARGININE, PCK_ASPARAGINE, PCK_ASPARTIC_ACID, PCK_CYSTEINE, PCK_GLUTAMIC_ACID, PCK_GLUTAMINE, PCK_GLYCINE, PCK_HISTIDINE, PCK_ISOLEUCINE, PCK_LEUCINE, PCK_LYSINE, PCK_METHIONINE, PCK_PHENYLALANINE, PCK_PROLINE, PCK_SERINE, PCK_THREONINE, PCK_TRYPTOPHAN, PCK_TYROSINE, PCK_VALINE, PCK_SELENOCYSTEINE, PCK_PYRROLYSINE, PCK_ASPARAGINE_OR_ASPARTIC_ACID, PCK_GLUTAMINE_OR_GLUTAMIC_ACID, PCK_LEUCINE_OR_ISOLEUCINE, PCK_ANY }
	Plain enum of proteinogenic amino acids.

enum	bit_proteinogenic { BIT_NONE =0x00, BIT_ALANINE =0x01, BIT_ARGININE =0x02, BIT_ASPARAGINE =0x04, BIT_ASPARTIC_ACID =0x08, BIT_CYSTEINE =0x10, BIT_GLUTAMIC_ACID =0x20, BIT_GLUTAMINE =0x40, BIT_GLYCINE =0x80, BIT_HISTIDINE =0x100, BIT_ISOLEUCINE =0x200, BIT_LEUCINE =0x400, BIT_LYSINE =0x800, BIT_METHIONINE =0x1000, BIT_PHENYLALANINE =0x2000, BIT_PROLINE =0x4000, BIT_SERINE =0x8000, BIT_THREONINE =0x10000, BIT_TRYPTOPHAN =0x20000, BIT_TYROSINE =0x40000, BIT_VALINE =0x80000, BIT_SELENOCYSTEINE =0x100000, BIT_PYRROLYSINE =0x200000, BIT_ANY =0x3FFFFF }
	Bitmask enum of proteinogenic amino acids.

Static Public Member Functions
static packed_proteinogenic	codon_std (const shore::nuc::base b1, const shore::nuc::base b2, const shore::nuc::base b3)
	Translate a triplet according to the standard code.

static packed_proteinogenic	dec (const char c)
	Convert to char.

static char	enc (const packed_proteinogenic p)
	Get from char.

static const std::string &	mnemonic (const packed_proteinogenic p)
	Get the 3-character mnemonic.

static const std::string &	name (const packed_proteinogenic p)
	Get the name of the amino acid as a string.

Detailed Description

Amino acid symbols.

The documentation for this class was generated from the following file:

Public Types