fastq.hpp File Reference

FastQ file IO. More...

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Classes
class	shore::basic_fastq_reader
	Fastq file reader (basic interface). More...
class	shore::fastq_writer
	FastQ file writer. More...
class	shore::qual_writer
	.qual file writer. More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Typedefs
typedef shore::monolithic < basic_fastq_reader, shore::read, shore::read::compare_type >	shore::fastq_reader
	Fastq file reader (monolithic interface).
typedef shore::source < fastq_reader >	shore::fastq_source
	Fastq file pipeline source.
typedef shore::sink< fastq_writer >	shore::fastq_sink
	Fastq file pipeline sink.
typedef shore::sink< qual_writer >	shore::qual_sink
	.qual file pipeline sink.

Enumerations
enum	shore::FastqQualType { FQ_QUAL_SANGER, FQ_QUAL_ILLUMINA, FQ_QUAL_SOLEXA }
	Different types of quality string encodings for FastQ files.

Detailed Description

FastQ file IO.

Author

Felix Ott