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fmtio Directory Reference

Files

file  alignment.hpp [code]
 File format independent short read alignment reader.
 
file  aln.hpp [code]
 Cisgenome ALN file IO.
 
file  bed.hpp [code]
 BED file IO.
 
file  eland.hpp [code]
 ELAND alignment file IO.
 
file  fasta.hpp [code]
 FastA file IO.
 
file  fastq.hpp [code]
 FastQ file IO.
 
file  flatread.hpp [code]
 SHORE FlatRead format file IO.
 
file  gff.hpp [code]
 GFF file IO.
 
file  maplist.hpp [code]
 SHORE MapList file IO.
 
file  mummer.hpp [code]
 MUMmer delta file IO.
 
file  psl.hpp [code]
 BLAT PSL / PSLX file IO.
 
file  qseq.hpp [code]
 Illumina QSEQ read file format IO.
 
file  read.hpp [code]
 File format independent short read file reader.
 
file  refdict.hpp [code]
 
file  sam.hpp [code]
 SAM/BAM file IO.
 
file  segment.hpp [code]
 Read genomic segments in various file formats.
 
file  sff.hpp [code]
 454 SFF file IO.
 
file  text.hpp [code]
 ASCII plain text file IO.
 
file  vcf.hpp [code]
 Currently just quality_variant -> VCF conversion.