SHORE API
|
Files | |
file | alignment.hpp [code] |
File format independent short read alignment reader. | |
file | aln.hpp [code] |
Cisgenome ALN file IO. | |
file | bed.hpp [code] |
BED file IO. | |
file | eland.hpp [code] |
ELAND alignment file IO. | |
file | fasta.hpp [code] |
FastA file IO. | |
file | fastq.hpp [code] |
FastQ file IO. | |
file | flatread.hpp [code] |
SHORE FlatRead format file IO. | |
file | gff.hpp [code] |
GFF file IO. | |
file | maplist.hpp [code] |
SHORE MapList file IO. | |
file | mummer.hpp [code] |
MUMmer delta file IO. | |
file | psl.hpp [code] |
BLAT PSL / PSLX file IO. | |
file | qseq.hpp [code] |
Illumina QSEQ read file format IO. | |
file | read.hpp [code] |
File format independent short read file reader. | |
file | refdict.hpp [code] |
file | sam.hpp [code] |
SAM/BAM file IO. | |
file | segment.hpp [code] |
Read genomic segments in various file formats. | |
file | sff.hpp [code] |
454 SFF file IO. | |
file | text.hpp [code] |
ASCII plain text file IO. | |
file | vcf.hpp [code] |
Currently just quality_variant -> VCF conversion. | |