vcf.hpp File Reference

Currently just quality_variant -> VCF conversion. More...

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Classes
class	shore::vcf_writer
	Writes quality_variant entries in Variant Call Format (VCF). More...
class	shore::qualvar_reader
	quality_variant file reader. More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Typedefs
typedef shore::sink< vcf_writer >	shore::vcf_sink
	VCF file pipeline sink.
typedef shore::source < qualvar_reader >	shore::qualvar_source
	quality_variant file pipeline source.

Functions
std::istream &	shore::operator>> (std::istream &in, shore::local_variant &e)

Detailed Description

Currently just quality_variant -> VCF conversion.

Author

Felix Ott