datatypes.hpp File Reference

SHORE data records. More...

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Classes
struct	shore::read
	Short read data type. More...
struct	shore::read::accessory
	Additional read information, usually represented as optional tags. More...
struct	shore::alignment
	Alignment, e.g. map.list file entry. More...
struct	shore::alignment::accessory
	Additional alignment information, usually represented as optional tags. More...
class	shore::sequence_record
	Record type for potentially long sequences, e.g. fasta entries. More...
struct	shore::sff_read
	SFF (Standard Flowgram Format) read record. More...
struct	shore::sff_read::commonhead
	SFF (Standard Flowgram Format) Common Header Section as documented in the GS FLX documentation. More...
struct	shore::sff_read::readhead
	SFF (Standard Flowgram Format) Read Header Section as documented in the GS FLX documentation. More...
struct	shore::sff_read::readdata
	SFF (Standard Flowgram Format) Read Data Section as documented in the GS FLX documentation. More...
struct	shore::annotation_entry
	GFF3 annotation entry. More...
struct	shore::delta_record
	NUCMER or PROMER alignment record. More...
struct	shore::coverage
	Record representing a segment of constant coverage. More...
struct	shore::refdict_entry
	Entry in a reference sequence dictionary. More...
struct	shore::local_variant
	quality_variant.txt file record. More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Functions
std::istream &	shore::operator>> (std::istream &is, annotation_entry::Phase &phase)
std::ostream &	shore::operator<< (std::ostream &os, const annotation_entry::Phase &phase)

Detailed Description

SHORE data records.