alignment_string_ops.hpp File Reference

SHORE alignment string handling facilites. More...

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Classes
class	shore::alignment_token
	Stretch of an alignment that corresponds to a single AlignmentOperation. More...
class	shore::alignment_tokenizer
	Tokenize an alignment string into alignment_tokens. More...
class	shore::alignment_builder
	Build an alignment string base by base. More...
class	shore::alignment_helper
	Alignment string utilities. More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Enumerations
enum	shore::AlignmentOperation {   ALN_NOOP =0, shore::ALN_MATCH =1, shore::ALN_SUBST =2, shore::ALN_INS =4,   shore::ALN_DEL =8, shore::ALN_LONGDEL =16, shore::ALN_FRAGMENT =32, shore::ALN_SOFTCLIP =64,   shore::ALN_BISULFITE =128, shore::ALN_GRAPH =256, shore::ALN_INVERT =512 }
	Operations that may me encoded in an alignment string. More...

Detailed Description

SHORE alignment string handling facilites.

Author

Felix Ott