suffix_index.hpp File Reference

Suffix array on disk. More...

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Classes
class	shore::suffix_index
	On disk DNA suffix array and hash. More...
class	shore::suffix_index::iterator
	Iterator that decodes raw suffix array coordinates into chromosome-position pairs. More...
class	shore::suffix_index::incremental_hash
	Update the hash value of a sequence incrementally. More...
class	shore::suffix_index::incremental_query
	Incrementally elongate a query while keeping track of the suffix array range. More...
class	shore::suffix_index::incremental_reverse_query
	Incrementally elongate a query while keeping track of the suffix array range (queries the reverse index). More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Detailed Description

Suffix array on disk.

Author

Felix Ott