sort_file.hpp File Reference

Low level text file sorting and merging functions. More...

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Classes
class	shore::cmp_tokens
	General purpose line comparator. More...
class	shore::line_sorter< StrictWeakOrdering >
	ASCII text file sorting. More...

Namespaces
	shore
	SHORE core API.

Constant Groups
	shore
	SHORE core API.

Functions
bool	shore::cmp_field0 (const char *const c0, const char *const c1)
	Numerically compares the first tab-delimited text field of two lines (reads_0.fl comparator).
bool	shore::scmp_field0 (const std::string &s0, const std::string &s1)
	Numerically compares the first tab-delimited text field of two lines (std::string version of the reads_0.fl comparator).
bool	shore::cmp_field0_lex (const char *const c0, const char *const c1)
	Lexically compares the first tab-delimited text field of two lines.
bool	shore::cmp_line (const char *const c0, const char *const c1)
	Compares two text lines.
bool	shore::cmp_maplist (const char *const c0, const char *const c1)
	Compares two map.list lines by position (columns 1&2).
bool	shore::cmp_maplist_readid (const char *const c0, const char *const c1)
	Compares two map.list lines by read id (column 4).
bool	shore::cmp_sam (const char *const c0, const char *const c1)
	Compares two mapping lines in sam format.
template<int K>
bool	shore::cmp_field (const char *const c0, const char *const c1)
	Numerically compares two lines by field K (offset 0).
template<int K>
bool	shore::cmp_field_lex (const char *const c0, const char *const c1)
	Lexically compares two lines by field K (offset 0).

Detailed Description

Low level text file sorting and merging functions.

Author

Felix Ott