User contributions
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- 09:24, 27 September 2011 (diff | hist) . . (+58) . . Shore consensus
- 09:03, 27 September 2011 (diff | hist) . . (+52) . . Shore consensus (→Command line options)
- 09:01, 27 September 2011 (diff | hist) . . (+253) . . Frequently Asked Questions
- 17:35, 26 September 2011 (diff | hist) . . (+185) . . Shore srna (→SHORE srna result files)
- 17:28, 26 September 2011 (diff | hist) . . (+78) . . SHORE v0.7 file formats (→Read file format)
- 17:26, 26 September 2011 (diff | hist) . . (+183) . . SHORE v0.7 file formats (→Alignment file format)
- 16:44, 26 September 2011 (diff | hist) . . (+16) . . Shore srna (→Command line options)
- 16:43, 26 September 2011 (diff | hist) . . (+45) . . Shore srna
- 16:42, 26 September 2011 (diff | hist) . . (+762) . . Shore srna (→SHORE srna result files)
- 16:26, 26 September 2011 (diff | hist) . . (+13) . . Shore peak (→SHORE peak result files)
- 16:24, 26 September 2011 (diff | hist) . . (+2,002) . . Shore srna
- 16:54, 23 September 2011 (diff | hist) . . (+159) . . Shore consensus (→Command line options)
- 16:20, 23 September 2011 (diff | hist) . . (0) . . SHORE Documentation (→Getting help)
- 16:18, 23 September 2011 (diff | hist) . . (-213) . . Shore peak (→Command line options)
- 16:14, 23 September 2011 (diff | hist) . . (-61) . . Shore count
- 15:13, 23 September 2011 (diff | hist) . . (+28) . . Running SHORE for the First Time - A Quick Guide
- 15:10, 23 September 2011 (diff | hist) . . (-68) . . Shore peak
- 15:09, 23 September 2011 (diff | hist) . . (+31) . . N Subprogram (Redirected page to SHORE Subprograms) (current)
- 15:09, 23 September 2011 (diff | hist) . . (+171) . . SHORE v0.7 file formats
- 15:06, 23 September 2011 (diff | hist) . . (-2,415) . . SHORE v0.7 file formats (→SHORE peak result files)
- 15:06, 23 September 2011 (diff | hist) . . (-4) . . Shore peak (→SHORE peak result files)
- 15:05, 23 September 2011 (diff | hist) . . (+2,441) . . Shore peak
- 15:04, 23 September 2011 (diff | hist) . . (-143) . . Shore consensus
- 15:04, 23 September 2011 (diff | hist) . . (+17,396) . . Shore consensus
- 15:03, 23 September 2011 (diff | hist) . . (-17,372) . . SHORE v0.7 file formats (→SHORE consensus result files)
- 15:00, 23 September 2011 (diff | hist) . . (+2,103) . . SHORE Subprograms
- 14:55, 23 September 2011 (diff | hist) . . (+1,082) . . N Shore ranksim (Created page with ''''shore ranksim''' is a rankproduct / ranksum simulator. '''Usage:''' shore ranksim [OPTIONS] [FILES] {|cellpadding=5 | colspan=2 | '''Allowed options''' |---- | ''-o'', ''…')
- 14:54, 23 September 2011 (diff | hist) . . (0) . . m Shore qVar (moved Shore qvar to Shore qVar)
- 14:54, 23 September 2011 (diff | hist) . . (+24) . . N Shore qvar (moved Shore qvar to Shore qVar) (current)
- 14:48, 23 September 2011 (diff | hist) . . (0) . . m Shore idtrans (moved Idtrans to Shore idtrans)
- 14:48, 23 September 2011 (diff | hist) . . (-1,204) . . SHORE Subprograms (→shore idtrans)
- 14:48, 23 September 2011 (diff | hist) . . (+1,189) . . N Shore idtrans (Created page with 'SHORE uses numerical identifiers for all sequences of the reference. '''shore idtrans''' simplifies translating these numbers in some of the result files back into chromosome nam…')
- 14:47, 23 September 2011 (diff | hist) . . (-2,242) . . SHORE Subprograms (→shore 2dex)
- 14:47, 23 September 2011 (diff | hist) . . (+2,252) . . N Shore 2dex (Created page with ''''shore 2dex''' implements range-indexed queries for tab-delimited text files. '''Usage:''' shore 2dex [OPTIONS] [TEXT_FILES] {| | colspan=2 | '''Mandatory''' |---- | ''-i…')
- 14:46, 23 September 2011 (diff | hist) . . (-581) . . SHORE Subprograms (→shore compress)
- 14:45, 23 September 2011 (diff | hist) . . (+752) . . N Shore compress (Created page with ''''shore compress''' compresses files to SHORE's indexed gzip format. The file format is fully compatible with gzip, but contains additional indexing information that is required…')
- 14:42, 23 September 2011 (diff | hist) . . (-53) . . SHORE Subprograms (→shore sort)
- 14:42, 23 September 2011 (diff | hist) . . (-2,319) . . SHORE Subprograms (→shore sort)
- 14:41, 23 September 2011 (diff | hist) . . (+2,386) . . N Shore sort (Created page with ''''shore sort''' sorts, merges or queries tab-delimited text files. '''Usage:''' shore sort [OPTIONS] [TEXT_FILES] {| | colspan=2 | '''Allowed options''' |---- | ''-i'', ''…')
- 14:40, 23 September 2011 (diff | hist) . . (-1,561) . . SHORE Subprograms (→shore convert)
- 14:40, 23 September 2011 (diff | hist) . . (+2,730) . . Shore convert
- 14:33, 23 September 2011 (diff | hist) . . (-1,740) . . SHORE Subprograms (→shore annotate_region)
- 14:33, 23 September 2011 (diff | hist) . . (+1,715) . . N Shore annotate region (Created page with ''''shore annotate_region''' can be used to annotate previously defined genomic regions with the overlapping or nearest genes present in an annotation file. Only the central base …')
- 14:33, 23 September 2011 (diff | hist) . . (-1,756) . . SHORE Subprograms (→shore mtc)
- 14:32, 23 September 2011 (diff | hist) . . (+1,743) . . N Shore mtc (Created page with 'The subprogram '''shore mtc''' implements various multiple testing correction methods. The expected input is a tab-delimited text file with a header, and the column containing th…')
- 14:32, 23 September 2011 (diff | hist) . . (-1,662) . . SHORE Subprograms (→shore binom_test)
- 14:32, 23 September 2011 (diff | hist) . . (+1,660) . . N Shore binom test (Created page with '=shore binom_test= ''shore binom_test'' can be used to evaluate two sets of count data agaist each other using a binomial test. '''Usage:''' shore binom_test [OPTIONS] {| | …')
- 14:31, 23 September 2011 (diff | hist) . . (-761) . . SHORE Subprograms (→shore tagstats)
- 14:31, 23 September 2011 (diff | hist) . . (+770) . . N Shore tagstats (Created page with ''''shore tagstats''' gathers read statistics for one or multiple samples. This is mainly intended for small RNA sequencing when no reference is available. '''Usage:''' shore ta…')
- 14:30, 23 September 2011 (diff | hist) . . (-4,266) . . SHORE Subprograms (→shore count)
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