Shore tagstats
From SHORE wiki
shore tagstats gathers read statistics for one or multiple samples. This is mainly intended for small RNA sequencing when no reference is available.
Command line options
Usage: shore tagstats [OPTIONS] [PATHS]
| Allowed options | ||
| -i, --readpaths=<arg[:...][,...]> | SHORE directories or read file paths | |
| -o, --outdir=<arg> | (Default: ReadAnalysis) | Output directory |
| -r, --report=<arg> | (Default: 1) | Only report a sequence if it's represented at least <arg> times |
| -p, --pseudo=<arg> | (Default: 0) | Add a pseudocount of <arg> to each read count |
