Shore binom test

shore binom_test

shore binom_test can be used to evaluate two sets of count data agaist each other using a binomial test.

Usage: shore binom_test [OPTIONS]

Allowed options
-i, --input-file=<arg>	(Default: stdin)	Read count input file
-o, --output-file=<arg>	(Default: stdout)	Output file
-p, --distribution-p=<arg>	(Default: 0.5)	Parameter p of the binomial distribution
-n, --normalization-file=<arg>		File with scaling factors for each column (overrides '-p')
-a, --alternative=<arg>	(Default: less)	Specifies the alternative hypothesis for the test (less or greater or twosided)
-1, --first-column=<arg>		Name of the first read count column
-2, --2nd-column=<arg>		Name of the second read count column (tested vs. column 1)
--global-scaling=<arg>	(Default: 1)	Scaling constant with wich all read counts are multiplied
-j, --input-header=<arg[,...]>		Specify header for input file, if not available
-f, --fold-change		Report fold enrichment values
--fdr-bh		Calculate Benjamini-Hochberg FDR
--sort		Sort output