Downloading and Installing SHORE

Download

Download the latest SHORE release from https://sourceforge.net/projects/shore/ or http://1001genomes.org/downloads/ or check out the git repository to compile SHORE from the very latest source:

> git clone git://shore.git.sourceforge.net/gitroot/shore/shore

Installing SHORE using the binary file

Navigate to the folder where you stored the downloaded file:

 > tar xzvf shore_<platform>_<version>.tar.gz

SHORE is now installed.

Installing SHORE using the source files

Navigate to the folder where you stored the downloaded file

> tar xzvf shore_source_<version>.tar.gz > cd shore_source_<version>

(or navigate to your shore git folder). See the file INSTALL in the SHORE directory for further installation instructions.

Download and install a mapping tool

SHORE can currently be run with five different mapping tools. The native tool of SHORE is GenomeMapper, which can be downloaded from: http://1001genomes.org/downloads/ Navigate to the folder where you stored the downloaded file:

> tar xzvf genomemapper.tar.gz
> cd genomemapper
> make

GenomeMapper is now installed. Note Mac OS users might have to change the name of the Mac OS Makefile. See the GenomeMapper manual for further details and details on parallelization of GenomeMapper.

In addtition to GenomeMapper, SHORE supports several third party mappers.